Concepedia

Staufen1 senses overall transcript secondary structure to regulate translation

Emiliano P. Ricci, Alper Küçükural, Can Cenik, Blandine C. Mercier, Guramrit Singh, Erin E. Heyer, Ami Ashar-Patel, Lingtao Peng, Melissa J. Moore

Nature Structural & Molecular Biology · 2013 · 133 citations · 52 references

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52

BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan, Ira M. Hall · Bioinformatics · 2010 · 30.4K citations · Full text

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead, Cole Trapnell, Mihai Pop et al. · Genome biology · 2009 · 23K citations · Full text

, , +15

TopHat: discovering splice junctions with RNA-Seq

Cole Trapnell, Lior Pachter, Steven L. Salzberg · Bioinformatics · 2009 · 12.1K citations · Full text

, , +16

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

Davis J. McCarthy, Yunshun Chen, Gordon K. Smyth · Nucleic Acids Research · 2012 · 5.8K citations · Full text

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The Vienna RNA Websuite

Andreas Gruber, Ronny Lorenz, Richard Neuböck et al. · Nucleic Acids Research · 2008 · 2.8K citations · Full text

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