The Vienna RNA Websuite

TLDR

The Vienna RNA Websuite is a comprehensive collection of tools for folding, design and analysis of RNA sequences. It provides a web interface to the most commonly used programs of the Vienna RNA package, including folding of single and aligned sequences, prediction of RNA‑RNA interactions, design of sequences with a given structure, analysis of folding landscapes using the barriers program, and structural RNA alignments using LocARNA. The web server and downloadable software packages are freely accessible at http://rna.tbi.univie.ac.at/.

Abstract

The Vienna RNA Websuite is a comprehensive collection of tools for folding, design and analysis of RNA sequences. It provides a web interface to the most commonly used programs of the Vienna RNA package. Among them, we find folding of single and aligned sequences, prediction of RNA-RNA interactions, and design of sequences with a given structure. Additionally, we provide analysis of folding landscapes using the barriers program and structural RNA alignments using LocARNA. The web server together with software packages for download is freely accessible at http://rna.tbi.univie.ac.at/.