Nucleic Acids Research · 2008 · 2.7K citations · 23 references
BiologyFunctional GenomicsStructural Rna AlignmentsVienna Rna WebsuiteGeneticsNatural SciencesComputational BiologyRna BiologyMolecular BiologySequence AnalysisVienna Rna PackageRna Structure PredictionGenomicsSequence AlignmentSystems BiologyMedicineBioinformaticsStructural Biology
The Vienna RNA Websuite is a comprehensive collection of tools for folding, design and analysis of RNA sequences. It provides a web interface to the most commonly used programs of the Vienna RNA package, including folding of single and aligned sequences, prediction of RNA‑RNA interactions, design of sequences with a given structure, analysis of folding landscapes using the barriers program, and structural RNA alignments using LocARNA. The web server and downloadable software packages are freely accessible at http://rna.tbi.univie.ac.at/.
The Vienna RNA Websuite is a comprehensive collection of tools for folding, design and analysis of RNA sequences. It provides a web interface to the most commonly used programs of the Vienna RNA package. Among them, we find folding of single and aligned sequences, prediction of RNA-RNA interactions, and design of sequences with a given structure. Additionally, we provide analysis of folding landscapes using the barriers program and structural RNA alignments using LocARNA. The web server together with software packages for download is freely accessible at http://rna.tbi.univie.ac.at/.
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Obesity Surgery · 1997 · 3.9K citations
David H. Mathews, Jeffrey Sabina, Michael Zuker et al. · Journal of Molecular Biology · 1999 · 3.8K citations · Full text
Engineering, Structural Bioinformatics, Biomolecular Structure Prediction +20
Vienna RNA secondary structure server
Ivo L. Hofacker · Nucleic Acids Research · 2003 · 2.4K citations · Full text
Sequence Motif, Vienna Rna, Consensus Secondary Structure +15