PLoS ONE · 2012 · 81 citations · 41 references
Life SciencesMicrobiologyMolecular BiologyBacteriologyProteomicsTranscriptomicsBacterial Virulence FactorsGene Regulation In MicrobesMicrobial Gene Regulatory NetworksMicrobial ProteomicsQuorum SensingQuorum Sensing In PathogenesisN-acyl Homoserine LactonesProtease ProductionProteolytic ActivityQuorum Sensing Control Of OperonsQuorum Sensing GenesQuorum Sensing RegulationQuorum Sensing SignalingQuorum Sensing Signals
Quorum sensing in Burkholderia cenocepacia H111 involves two signalling systems that depend on different signal molecules, namely N-acyl homoserine lactones (AHLs) and the diffusible signal factor cis-2-dodecenoic acid (BDSF). Previous studies have shown that AHLs and BDSF control similar phenotypic traits, including biofilm formation, proteolytic activity and pathogenicity. In this study we mapped the BDSF stimulon by RNA-Seq and shotgun proteomics analysis. We demonstrate that a set of the identified BDSF-regulated genes or proteins are also controlled by AHLs, suggesting that the two regulons partially overlap. The detailed analysis of two mutually regulated operons, one encoding three lectins and the other one encoding the large surface protein BapA and its type I secretion machinery, revealed that both AHLs and BDSF are required for full expression, suggesting that the two signalling systems operate in parallel. In accordance with this, we show that both AHLs and BDSF are required for biofilm formation and protease production.
41
Differential expression analysis for sequence count data
Simon Anders, Wolfgang Huber · Genome biology · 2010 · 16.4K citations · Full text
OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
Li Li, Christian J. Stoeckert, David S. Roos · Genome Research · 2003 · 6.1K citations · Full text