STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

Damian Szklarczyk, Annika L. Gable, David Lyon, +9

Nucleic Acids Research

GeneticsMolecular BiologyGenomicsBioinformatics DatabaseTranscriptional Regulation +21

STRING v10: protein–protein interaction networks, integrated over the tree of life

Damian Szklarczyk, Andrea Franceschini, Stefan Wyder, +10

Nucleic Acids Research

GeneticsMolecular BiologyGenomicsBioinformatics DatabaseMolecular Ecology +21

The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets

Damian Szklarczyk, Annika L. Gable, Katerina Nastou, +9

Nucleic Acids Research

The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest

Damian Szklarczyk, Rebecca Kirsch, Mikaela Koutrouli, +10

Nucleic Acids Research

Functional Enrichment AnalysisGeneticsMolecular BiologyGenomicsBioinformatics Database +22

The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible

Damian Szklarczyk, John H. Morris, Helen Cook, +9

Nucleic Acids Research

EngineeringGeneticsDatabasesMolecular BiologyGenomics +20

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

Jaime Huerta‐Cepas, Damian Szklarczyk, Davide Heller, +9

Nucleic Acids Research

Comparative GenomicsPublic DatabaseGenomicsPhylogenetic AnalysisViral Evolution +18

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

Andrea Franceschini, Damian Szklarczyk, Sune Pletscher-Frankild, +8

Nucleic Acids Research

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

Damian Szklarczyk, Andrea Franceschini, Michael Kuhn, +9

Nucleic Acids Research

GeneticsMolecular BiologyBioinformatics DatabaseAccessory InformationInteracting Genes +17

Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper

Jaime Huerta‐Cepas, Luís Pedro Coelho, Damian Szklarczyk, +3

Molecular Biology and Evolution

GeneticsGenomicsGene RecognitionBioinformatics DatabaseMolecular Ecology +17

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

Jaime Huerta‐Cepas, Damian Szklarczyk, Helen Cook, +9

Nucleic Acids Research

GeneticsMolecular GeneticsEggnog 4.5Hierarchical Orthology FrameworkGenomics +24