PLoS ONE · 2010 · 104 citations · 32 references
While computationally more demanding and slower than PWM-based approaches, this dinucleotide method is straightforward, both conceptually and in implementation, and can serve as a basis for future improvements.
32
WebLogo: A Sequence Logo Generator: Figure 1
Gavin E. Crooks, Gary C. Hon, John‐Marc Chandonia et al. · Genome Research · 2004 · 12.7K citations · Full text
Transcriptional regulatory code of a eukaryotic genome
Christopher Harbison, D. Benjamin Gordon, Tong Ihn Lee et al. · Nature · 2004 · 2.2K citations · Full text
A genomic code for nucleosome positioning
Eran Segal, Yvonne Fondufe‐Mittendorf, Lingyi Chen et al. · Nature · 2006 · 1.5K citations · Full text
Long-range correlations in nucleotide sequences
Chung‐Kang Peng, Sergey V. Buldyrev, Ary L. Goldberger et al. · Nature · 1992 · 1.4K citations