Concepedia

Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

Mitchell Guttman, Manuel Garber, Joshua Z. Levin, Julie Donaghey, James Robinson, Xian Adiconis, Magdalena J. Koziol, Andreas Gnirke, Chad Nusbaum, John L. Rinn,

Nature Biotechnology · 2010 · 1.3K citations · 30 references

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30

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead, Cole Trapnell, Mihai Pop et al. · Genome biology · 2009 · 23K citations · Full text

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

A Mortazavi, Brian A. Williams, Kenneth McCue et al. · Nature Methods · 2008 · 14.3K citations

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TopHat: discovering splice junctions with RNA-Seq

Cole Trapnell, Lior Pachter, Steven L. Salzberg · Bioinformatics · 2009 · 12.1K citations · Full text

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Alternative isoform regulation in human tissue transcriptomes

Eric T. Wang, Rickard Sandberg, Shujun Luo et al. · Nature · 2008 · 5.4K citations · Full text

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NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

Kim D. Pruitt, Tatiana Tatusova, D. R. Maglott · Nucleic Acids Research · 2006 · 4.7K citations · Full text

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