Concepedia

Transcript Reconstruction

Transcript Reconstruction is a computational method within transcriptomics that distinguishes itself by inferring full-length RNA transcript structures from long-read sequencing data, enabling the identification of splice variants and novel transcripts with high accuracy and completeness.

122

Publications

75.3K

Citations

706

Authors

291

Institutions

Publications per year

2017–2026

51

Parents

Publications

122

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Manfred Grabherr, Brian J. Haas, Moran Yassour et al. · Nature Biotechnology · 2011 · 22.6K citations · Full text

, , +13

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

Mihaela Pertea, Geo Pertea, Corina Antonescu et al. · Nature Biotechnology · 2015 · 15.5K citations · Full text

, , +10

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Daehwan Kim, Geo Pertea, Cole Trapnell et al. · Genome biology · 2013 · 13.7K citations · Full text

, , +14

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

Brian J. Haas, Alexie Papanicolaou, Moran Yassour et al. · Nature Protocols · 2013 · 9.1K citations · Full text

, , +16

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

Qun Pan, Ofer Shai, Leo J. Lee et al. · Nature Genetics · 2008 · 4K citations

, , +16

1–5 of 122

Authors

706

  1. EE
    Eduardo Eyras

    Institució Catalana de Recerca i Estudis Avançats, Spain

    5 publications · 492 citations

    5

    h-index

  2. KS
    Kristoffer Sahlin

    Science for Life Laboratory, Sweden

    4 publications · 317 citations

    4

    h-index

  3. BJ
    Brian J. Haas

    Broad Institute, United States

    4 publications · 31.9K citations

    4

    h-index

  4. PM
    Paul Medvedev

    Pennsylvania State University, United States

    4 publications · 317 citations

    4

    h-index

  5. GR
    Gunnar Rätsch

    ETH Zurich, Switzerland

    3 publications · 688 citations

    3

    h-index

1–5 of 706

Institutions

291

  1. Chinese Academy of Sciences

    Beijing, China

    9 h-index

    38 publications

    3.8K citations

  2. Universitat Pompeu Fabra

    Barcelona, Spain

    7 h-index

    20 publications

    2.9K citations

  3. Centre for Genomic Regulation

    Barcelona, Spain

    7 h-index

    15 publications

    2K citations

  4. Johns Hopkins University

    Baltimore, United States

    6 h-index

    25 publications

    104.4K citations

  5. Broad Institute

    Cambridge, United States

    6 h-index

    39 publications

    496.7K citations

  6. Pennsylvania State University

    State College, United States

    5 h-index

    9 publications

    528 citations

  7. Johns Hopkins Medicine

    Baltimore, United States

    5 h-index

    12 publications

    103.3K citations

  8. Massachusetts Institute of Technology

    Cambridge, United States

    5 h-index

    29 publications

    460.1K citations

1–8 of 291

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 10 publications · 455 citations

    10

    h-index

  2. BMC Genomics

    9 publications · 272 citations

    9

    h-index

  3. BMC Bioinformatics

    8 publications · 840 citations

    8

    h-index

  4. Genome biology

    7 publications · 14.1K citations

    7

    h-index

  5. Nature Biotechnology

    6 publications · 40.1K citations

    6

    h-index

1–5