Proceedings of the National Academy of Sciences · 2010 · 852 citations · 41 references
MedicineCancer BiologyOncologyCarcinogenesisTumor HeterogeneityTumor ProgressionCancer ProgressionClonal DynamicsClonal EvolutionDisease Progression ModelingGenetic HeterogeneityTumor Growth KineticsClonal ExpansionDiscrete-time ModelsOncogenic Driver MutationsPassenger MutationsSomatic MutationsTumor Evolution ModelingTumor Heterogeneity ModelingTumor Progression Dynamics
Major efforts to sequence cancer genomes are now occurring throughout the world. Though the emerging data from these studies are illuminating, their reconciliation with epidemiologic and clinical observations poses a major challenge. In the current study, we provide a mathematical model that begins to address this challenge. We model tumors as a discrete time branching process that starts with a single driver mutation and proceeds as each new driver mutation leads to a slightly increased rate of clonal expansion. Using the model, we observe tremendous variation in the rate of tumor development-providing an understanding of the heterogeneity in tumor sizes and development times that have been observed by epidemiologists and clinicians. Furthermore, the model provides a simple formula for the number of driver mutations as a function of the total number of mutations in the tumor. Finally, when applied to recent experimental data, the model allows us to calculate the actual selective advantage provided by typical somatic mutations in human tumors in situ. This selective advantage is surprisingly small--0.004 ± 0.0004--and has major implications for experimental cancer research.
41
Leo Breiman · Machine Learning · 2001 · 126.2K citations · Full text
An Integrated Genomic Analysis of Human Glioblastoma Multiforme
D. Williams Parsons, Siân Jones, Xiaosong Zhang et al. · Science · 2008 · 5.8K citations · Full text
Core Signaling Pathways in Human Pancreatic Cancers Revealed by Global Genomic Analyses
Siân Jones, D. Williams Parsons, Jimmy Lin et al. · Science · 2008 · 4K citations · Full text
The Consensus Coding Sequences of Human Breast and Colorectal Cancers
Tobias Sjöblom, Siân Jones, Laura D. Wood et al. · Science · 2006 · 3.2K citations