Concepedia

Transcriptome Assembly Quality Assessment

Transcriptome Assembly Quality Assessment is a systematic methodology used in transcriptomics to evaluate the accuracy, completeness, and structural fidelity of assembled transcript sequences from marine organisms by leveraging reference-based metrics, de novo assembly features, and biological consistency indicators.

88

Publications

6.9K

Citations

525

Authors

210

Institutions

Publications per year

2017–2026

32

Parents

Publications

88

TransRate: reference-free quality assessment of de novo transcriptome assemblies

Richard Smith-Unna, Chris Boursnell, Rob Patro et al. · Genome Research · 2016 · 918 citations · Full text

, , +17

rnaSPAdes: a <i>de novo</i> transcriptome assembler and its application to RNA-Seq data

Elena Bushmanova, Dmitry Antipov, Alla Lapidus et al. · GigaScience · 2019 · 900 citations · Full text

, , +15

De Novo Assembly of Chickpea Transcriptome Using Short Reads for Gene Discovery and Marker Identification

Rohini Garg, Ravi K. Patel, Akhilesh K. Tyagi et al. · DNA Research · 2011 · 457 citations · Full text

, , +17

A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing

Runxuan Zhang, Cristiane P. G. Calixto, Yamile Márquez et al. · Nucleic Acids Research · 2017 · 322 citations · Full text

, , +17

Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensive <i>in silico</i> assessment of <scp>RNA</scp>‐seq experiments

Nagarjun Vijay, Jelmer W. Poelstra, Axel Künstner et al. · Molecular Ecology · 2012 · 238 citations · Full text

, , +17

1–5 of 88

Authors

525

  1. MD
    Matthew D. MacManes

    University of New Hampshire, United States

    3 publications · 150 citations

    3

    h-index

  2. AP
    Alberto Pallavicini

    University of Trieste, Italy

    3 publications · 137 citations

    3

    h-index

  3. AD
    Andrey D. Prjibelski

    St Petersburg University, Russia

    3 publications · 1.1K citations

    3

    h-index

  4. DA
    Dmitry Antipov

    St Petersburg University, Russia

    3 publications · 1.1K citations

    3

    h-index

  5. EB
    Elena Bushmanova

    St Petersburg University, Russia

    3 publications · 1.1K citations

    3

    h-index

1–5 of 525

Institutions

210

  1. Chinese Academy of Sciences

    Beijing, China

    4 h-index

    10 publications

    593 citations

  2. Chinese Academy of Fishery Sciences

    Beijing, China

    4 h-index

    24 publications

    2.2K citations

  3. The University of Adelaide

    Adelaide, Australia

    3 h-index

    5 publications

    265 citations

  4. University of California, Davis

    Davis, United States

    3 h-index

    8 publications

    472 citations

  5. St Petersburg University

    Saint Petersburg, Russia

    3 h-index

    12 publications

    4.5K citations

  6. University of New Hampshire

    Durham, United States

    3 h-index

    7 publications

    212 citations

  7. University of Cambridge

    Cambridge, United Kingdom

    3 h-index

    7 publications

    3K citations

  8. Chinese Academy of Tropical Agricultural Sciences

    Haikou, China

    3 h-index

    9 publications

    255 citations

1–8 of 210

Venues

  1. BMC Genomics

    14 publications · 825 citations

    13

    h-index

  2. PLoS ONE

    10 publications · 854 citations

    10

    h-index

  3. Marine Genomics

    8 publications · 173 citations

    8

    h-index

  4. Bioinformatics

    3 publications · 342 citations

    3

    h-index

  5. GigaScience

    3 publications · 1.1K citations

    3

    h-index

1–5