A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing

Runxuan Zhang, Cristiane P. G. Calixto, Yamile Márquez, +14

Nucleic Acids Research

GeneticsRna SplicingTranscriptomics TechnologyGenomicsPlant Genomics +15

Rapid and Dynamic Alternative Splicing Impacts the Arabidopsis Cold Response Transcriptome

Cristiane P. G. Calixto, Wenbin Guo, Allan B. James, +7

The Plant Cell

Physiological, biochemical and molecular responses of the potato (<i><scp>S</scp>olanum tuberosum</i> <scp>L</scp>.) plant to moderately elevated temperature

Robert D. Hancock, Wayne L. Morris, Laurence J. M. Ducreux, +8

Plant Cell & Environment

Molecular ResponsesBotanyGeneticsElevated TemperaturePlant Pathology +17

Multicategory Classification Using An Extreme Learning Machine for Microarray Gene Expression Cancer Diagnosis

Runxuan Zhang, Guang-Bin Huang, N. Sundararajan, +1

IEEE/ACM Transactions on Computational Biology and Bioinformatics

EngineeringMachine LearningDiagnosisPathologySupport Vector Machine +18

Illuminating the dark side of the human transcriptome with long read transcript sequencing

Richard Kuo, Yuanyuan Cheng, Runxuan Zhang, +4

BMC Genomics

Deterministic protein inference for shotgun proteomics data provides new insights into <i>Arabidopsis</i> pollen development and function

Monica A. Grobei, Ermir Qeli, Erich Brunner, +6

Genome Research

Phytophthora capsici-tomato interaction features dramatic shifts in gene expression associated with a hemi-biotrophic lifestyle

Julietta Jupe, Remco Stam, Andrew J.M. Howden, +4

Genome biology

3D RNA-seq: a powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists

Wenbin Guo, Nikoleta A. Τzioutziou, Gordon Stephen, +5

RNA Biology

EngineeringGeneticsFlexible ToolRna SplicingMolecular Biology +20

Identification and Characterization of miRNA Transcriptome in Potato by High-Throughput Sequencing

Runxuan Zhang, David Marshall, Glenn J. Bryan, +1

PLoS ONE

EngineeringBotanyGeneticsTranscriptomics TechnologyGenomics +17

A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis

Runxuan Zhang, Richard Kuo, Max Coulter, +36

Genome biology