Concepedia

Transcript Quantification

Transcript Quantification is the computational process of estimating the abundance levels of transcripts within a biological sample from high-throughput RNA sequencing data, distinguished from related analyses by its focus on assigning discrete expression values to full-length or assembled transcript isoforms rather than individual genes or exons.

470

Publications

151K

Citations

2.7K

Authors

903

Institutions

Publications per year

2017–2026

135

Variants

Transcript Abundance Estimation

Parents

Publications

470

A new mathematical model for relative quantification in real-time RT-PCR

Michael W. Pfaffl · Nucleic Acids Research · 2001 · 34.9K citations · Full text

, , +12

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Bo Li, Colin N. Dewey · BMC Bioinformatics · 2011 · 23.4K citations · Full text

, , +15

Mapping and quantifying mammalian transcriptomes by RNA-Seq

A Mortazavi, Brian A. Williams, Kenneth McCue et al. · Nature Methods · 2008 · 14.3K citations

, , +10

Salmon provides fast and bias-aware quantification of transcript expression

Rob Patro, Geet Duggal, Michael I. Love et al. · Nature Methods · 2017 · 13.7K citations · Full text

, , +12

Near-optimal probabilistic RNA-seq quantification

Nicolas Bray, Harold Pimentel, Páll Melsted et al. · Nature Biotechnology · 2016 · 11K citations · Full text

, , +6

1–5 of 470

Authors

2.7K

  1. MI
    Michael I. Love

    University of North Carolina at Chapel Hill, United States

    13 publications · 21.5K citations

    13

    h-index

  2. RP
    Rob Patro

    Stony Brook University, United States

    9 publications · 14.6K citations

    9

    h-index

  3. CS
    Charlotte Soneson

    SIB Swiss Institute of Bioinformatics, Switzerland

    7 publications · 7.2K citations

    7

    h-index

  4. LP
    Lior Pachter

    University of California, Berkeley, United States

    7 publications · 13.1K citations

    7

    h-index

  5. RA
    Rafael A. Irizarry

    Johns Hopkins University, United States

    6 publications · 14.5K citations

    6

    h-index

1–5 of 2.7K

Institutions

903

  1. Harvard University

    Cambridge, United States

    19 h-index

    51 publications

    42.3K citations

  2. SIB Swiss Institute of Bioinformatics

    Lausanne, Switzerland

    11 h-index

    23 publications

    15.7K citations

  3. Inserm

    Paris, France

    11 h-index

    46 publications

    2.6K citations

  4. University of North Carolina at Chapel Hill

    Chapel Hill, United States

    11 h-index

    26 publications

    1.5K citations

  5. University of California, Berkeley

    Berkeley, United States

    11 h-index

    35 publications

    38.3K citations

  6. Centre National de la Recherche Scientifique

    Paris, France

    11 h-index

    46 publications

    2.6K citations

  7. Stanford University

    Stanford, United States

    10 h-index

    28 publications

    2.7K citations

  8. James Hutton Institute

    Dundee, United Kingdom

    9 h-index

    62 publications

    3.8K citations

1–8 of 903

Venues

  1. BMC Genomics

    23 publications · 2.1K citations

    21

    h-index

  2. PLoS ONE

    25 publications · 2.1K citations

    21

    h-index

  3. Nucleic Acids Research

    23 publications · 36.6K citations

    19

    h-index

  4. Bioinformatics

    19 publications · 1.7K citations

    17

    h-index

  5. BMC Bioinformatics

    16 publications · 24.1K citations

    15

    h-index

1–5