Concepedia

Transcript Assembly

Transcript Assembly is the computational process of reconstructing full-length transcript sequences from fragmented RNA sequencing reads by identifying splice junctions and alternative splicing events within a reference genome or de novo.

269

Publications

76.2K

Citations

1.4K

Authors

565

Institutions

Publications per year

2017–2026

94

Parents

Publications

269

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Manfred Grabherr, Brian J. Haas, Moran Yassour et al. · Nature Biotechnology · 2011 · 22.6K citations · Full text

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Cole Trapnell, Brian A. Williams, Geo Pertea et al. · Nature Biotechnology · 2010 · 16.5K citations

, , +16

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

Qun Pan, Ofer Shai, Leo J. Lee et al. · Nature Genetics · 2008 · 4K citations

, , +16

Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

Brian Haas · Nucleic Acids Research · 2003 · 2.5K citations · Full text

, , +17

Transcriptome assembly from long-read RNA-seq alignments with StringTie2

Sam Kovaka, Aleksey V. Zimin, Geo Pertea et al. · Genome biology · 2019 · 2.1K citations · Full text

, , +17

1–5 of 269

Authors

1.4K

  1. GP
    Geo Pertea

    Johns Hopkins University, United States

    8 publications · 19.3K citations

    8

    h-index

  2. SL
    Steven L. Salzberg

    Johns Hopkins University, United States

    7 publications · 18.9K citations

    7

    h-index

  3. MP
    Mihaela Pertea

    Johns Hopkins University, United States

    6 publications · 2.8K citations

    6

    h-index

  4. JL
    Juntao Liu

    Shandong University, China

    5 publications · 596 citations

    5

    h-index

  5. MS
    Mingfu Shao

    École Polytechnique Fédérale de Lausanne, Switzerland

    4 publications · 315 citations

    4

    h-index

1–5 of 1.4K

Institutions

565

  1. Johns Hopkins University

    Baltimore, United States

    13 h-index

    53 publications

    16.4K citations

  2. Johns Hopkins Medicine

    Baltimore, United States

    10 h-index

    27 publications

    3.4K citations

  3. Centre National de la Recherche Scientifique

    Paris, France

    10 h-index

    43 publications

    3K citations

  4. Harvard University

    Cambridge, United States

    7 h-index

    23 publications

    6.1K citations

  5. Chinese Academy of Sciences

    Beijing, China

    7 h-index

    30 publications

    2.8K citations

  6. Broad Institute

    Cambridge, United States

    6 h-index

    30 publications

    437.5K citations

  7. University of Georgia

    Athens, United States

    6 h-index

    17 publications

    1.4K citations

  8. Agricultural Research Service

    Washington, United States

    6 h-index

    13 publications

    749 citations

1–8 of 565

Venues

  1. BMC Genomics

    28 publications · 2.2K citations

    23

    h-index

  2. PLoS ONE

    21 publications · 1.4K citations

    20

    h-index

  3. Genome Research

    GR · 16 publications · 3.7K citations

    16

    h-index

  4. Bioinformatics

    14 publications · 4.3K citations

    14

    h-index

  5. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 15 publications · 550 citations

    12

    h-index

1–5