Concepedia

Single-cell Genotype Inference

Single-Cell Genotype Inference is a computational method that determines the genetic makeup of individual cells from sequencing data, enabling the resolution of cellular heterogeneity in lineage reconstruction by identifying somatic variants at single-cell resolution.

29

Publications

2.4K

Citations

234

Authors

74

Institutions

Publications per year

2017–2026

23

Parents

Publications

29

Souporcell: robust clustering of single-cell RNA-seq data by genotype without reference genotypes

Haynes Heaton, Arthur M. Talman, Andrew Knights et al. · Nature Methods · 2020 · 555 citations · Full text

, , +16

Clonal Decomposition and DNA Replication States Defined by Scaled Single-Cell Genome Sequencing

Emma Laks, Andrew McPherson, Hans Zahn et al. · Cell · 2019 · 303 citations · Full text

, , +16

OncoNEM: inferring tumor evolution from single-cell sequencing data

Edith Ross, Florian Markowetz · Genome biology · 2016 · 275 citations · Full text

, , +17

Inferring Relevant Cell Types for Complex Traits by Using Single-Cell Gene Expression

Diego Calderon, Anand Bhaskar, David A. Knowles et al. · The American Journal of Human Genetics · 2017 · 142 citations · Full text

, , +16

SiCloneFit: Bayesian inference of population structure, genotype, and phylogeny of tumor clones from single-cell genome sequencing data

Hamim Zafar, Nicholas E. Navin, Ken Chen et al. · Genome Research · 2019 · 139 citations · Full text

, , +17

1–5 of 29

Authors

234

  1. DP
    David Posada

    Universidade de Vigo, Spain

    3 publications · 135 citations

    3

    h-index

  2. JB
    Justina Biele

    University of British Columbia, Canada

    2 publications · 428 citations

    2

    h-index

  3. AS
    Anne Senabouth

    Garvan Institute of Medical Research, Australia

    2 publications · 126 citations

    2

    h-index

  4. NE
    Nicholas E. Navin

    The University of Texas MD Anderson Cancer Center, United States

    2 publications · 155 citations

    2

    h-index

  5. EH
    Erin Hanson

    University of Central Florida, United States

    2 publications · 59 citations

    2

    h-index

1–5 of 234

Institutions

74

  1. University of Cambridge

    Cambridge, United Kingdom

    3 h-index

    6 publications

    1.7K citations

  2. Stanford University

    Stanford, United States

    3 h-index

    8 publications

    848 citations

  3. Galicia Sur Biomedical Foundation

    Vigo, Spain

    3 h-index

    5 publications

    228 citations

  4. Universidade de Vigo

    Vigo, Spain

    3 h-index

    5 publications

    228 citations

  5. Karlsruhe Institute of Technology

    Karlsruhe, Germany

    2 h-index

    2 publications

    93 citations

  6. Garvan Institute of Medical Research

    Darlinghurst, Australia

    2 h-index

    4 publications

    252 citations

  7. University of British Columbia

    Vancouver, Canada

    2 h-index

    58 publications

    16.3K citations

  8. Canada's Michael Smith Genome Sciences Centre

    Vancouver, Canada

    2 h-index

    13 publications

    3.8K citations

1–8 of 74

Venues

  1. Bioinformatics

    5 publications · 134 citations

    5

    h-index

  2. Genome biology

    4 publications · 480 citations

    4

    h-index

  3. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 4 publications · 59 citations

    4

    h-index

  4. Nature Methods

    2 publications · 680 citations

    2

    h-index

  5. Journal of Assisted Reproduction and Genetics

    JARG · 2 publications · 105 citations

    2

    h-index

1–5