Concepedia

Single-cell Data Visualization

Single-Cell Data Visualization is a subfield of biomedical data visualization that develops and applies computational methods for transforming high-dimensional single-cell omics measurements into graphical and often interactive representations that preserve cellular relationships and heterogeneity to support interpretation, hypothesis generation, and communication in single-cell systems biology.

308

Publications

41.4K

Citations

1.8K

Authors

529

Institutions

Publications per year

2017–2026

235

Parents

Children

Publications

308

Dimensionality reduction for visualizing single-cell data using UMAP

Étienne Becht, Leland McInnes, John Healy et al. · Nature Biotechnology · 2018 · 5.8K citations

, , +12

Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R

Davis J. McCarthy, Kieran R. Campbell, Aaron T. L. Lun et al. · Bioinformatics · 2016 · 2.1K citations · Full text

, , +15

FlowSOM: Using self‐organizing maps for visualization and interpretation of cytometry data

Sofie Van Gassen, Britt Callebaut, Mary J. van Helden et al. · Cytometry Part A · 2015 · 2.1K citations

, , +12

Mapping the Mouse Cell Atlas by Microwell-Seq

Xiaoping Han, Renying Wang, Yincong Zhou et al. · Cell · 2018 · 1.7K citations · Full text

, , +11

viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia

El-ad David Amir, Kara L. Davis, Michelle D. Tadmor et al. · Nature Biotechnology · 2013 · 1.6K citations · Full text

, , +12

1–5 of 308

Authors

1.8K

  1. FJ
    Fabian J. Theis

    Helmholtz Zentrum München, Germany

    8 publications · 892 citations

    8

    h-index

  2. GP
    Garry P. Nolan

    Stanford University, United States

    8 publications · 2.3K citations

    8

    h-index

  3. TH
    Thomas Höllt

    Delft University of Technology, Netherlands

    5 publications · 266 citations

    5

    h-index

  4. RG
    Raphaël Gottardo

    Fred Hutch Cancer Center, United States

    5 publications · 614 citations

    5

    h-index

  5. BB
    Bonnie Berger

    Massachusetts Institute of Technology, United States

    5 publications · 521 citations

    5

    h-index

1–5 of 1.8K

Institutions

529

  1. Broad Institute

    Cambridge, United States

    20 h-index

    67 publications

    5.7K citations

  2. Harvard University

    Cambridge, United States

    17 h-index

    82 publications

    13.4K citations

  3. Stanford University

    Stanford, United States

    17 h-index

    112 publications

    17.9K citations

  4. Helmholtz Zentrum München

    Munich, Germany

    12 h-index

    97 publications

    7.1K citations

  5. Yale University

    New Haven, United States

    12 h-index

    91 publications

    10.5K citations

  6. University of Pennsylvania

    Philadelphia, United States

    12 h-index

    48 publications

    3.1K citations

  7. University of California San Diego

    San Diego, United States

    9 h-index

    34 publications

    1.6K citations

  8. Inserm

    Paris, France

    9 h-index

    41 publications

    2.3K citations

1–8 of 529

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 44 publications · 1.8K citations

    22

    h-index

  2. Bioinformatics

    29 publications · 5.4K citations

    21

    h-index

  3. Nature Methods

    19 publications · 5.1K citations

    17

    h-index

  4. Nature Communications

    11 publications · 2.2K citations

    11

    h-index

  5. BMC Bioinformatics

    10 publications · 1.2K citations

    10

    h-index

1–5