Cell · 2018 · 1.7K citations · 60 references
Life SciencesCell BiologyMolecular BiologyCell DifferentiationSingle-cell BioinformaticsAnimal Cell CultureCell CharacterizationCell Culture MicrosystemsQuantitative Cell BiologySingle-cell Data VisualizationSpatial Single-cell AnalysisCell Atlas ConstructionCell AtlasingCell Type Mapping
60
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
Paul Shannon, Andrew Markiel, Owen Ozier et al. · Genome Research · 2003 · 54.3K citations · Full text
Classification and Regression by randomForest
Andy Liaw, Matthew C. Wiener · 2007 · 18.4K citations
Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
Evan Z. Macosko, Anindita Basu, Rahul Satija et al. · Cell · 2015 · 7.8K citations · Full text