Dimensionality reduction for visualizing single-cell data using UMAP

Visualizing Data using t-SNE

Laurens van der Maaten, Geoffrey E. Hinton · Journal of Machine Learning Research · 2008 · 35.7K citations

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Integrating single-cell transcriptomic data across different conditions, technologies, and species

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A Global Geometric Framework for Nonlinear Dimensionality Reduction

Joshua B. Tenenbaum, Vin de Silva, John Langford · Science · 2000 · 13.7K citations

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UMAP: Uniform Manifold Approximation and Projection

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SCANPY: large-scale single-cell gene expression data analysis

F. Alexander Wolf, Philipp Angerer, Fabian J. Theis · Genome biology · 2018 · 9.3K citations · Full text

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