Integrating single-cell transcriptomic data across different conditions, technologies, and species

References

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	Year	Citations
limma powers differential expression analyses for RNA-sequencing and microarray studies Matthew E. Ritchie, Belinda Phipson, Di Wu, Nucleic Acids Research GeneticsMolecular BiologyTranscriptomics TechnologyLimma PackageGenomics	2015	40.9K
Enrichr: a comprehensive gene set enrichment analysis web server 2016 update Maxim V. Kuleshov, Matthew R. Jones, Andrew D. Rouillard, Nucleic Acids Research GeneticsMolecular BiologyCurated Gene SetsGenomicsGene Recognition	2016	11.1K
Adjusting batch effects in microarray expression data using empirical Bayes methods W. Evan Johnson, Cheng Li, Ariel Rabinovic Biostatistics	2006	8.7K
Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets Evan Z. Macosko, Anindita Basu, Rahul Satija, Cell Systems BiologyFunctional GenomicsSingle Cell SequencingMedicineNatural Sciences	2015	7.6K
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells Cole Trapnell, Davide Cacchiarelli, Jonna Grimsby, Nature Biotechnology Pattern FormationDevelopmental BiologyCell DivisionCell InteractionSingle-cell Biology	2014	7.4K
Massively parallel digital transcriptional profiling of single cells Grace Zheng, Jessica M. Terry, Phillip Belgrader, Nature Communications	2017	7.4K
Spatial reconstruction of single-cell gene expression data Rahul Satija, Jeffrey A. Farrell, David Gennert, Nature Biotechnology Functional GenomicsEngineeringSingle Cell SequencingMedicineSpatial Omics	2015	7.3K
RELATIONS BETWEEN TWO SETS OF VARIATES Harold Hotelling Biometrika Literary TheoryHumanitiesLiterary CriticismOther WorksExtremal Set Theory	1936	5.4K
Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq Itay Tirosh, Benjamin Izar, Sanjay M. Prakadan, Science Melanoma TumorsImmunologyBiological MicroenvironmentsTumor BiologyOncology	2016	5K
Full-length RNA-seq from single cells using Smart-seq2 Simone Picelli, Omid R. Faridani, Åsa K. Björklund, Nature Protocols Functional GenomicsSingle Cell SequencingMedicineRna SequencingSingle-cell Genomics	2014	4.3K

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