Concepedia

Microbial Strain-level Variation

Microbial Strain-Level Variation is a genomic diversity phenomenon within microbial species that distinguishes individual strains by unique genetic and functional attributes, such as single-nucleotide polymorphisms, gene presence-absence patterns, and phenotypic traits, despite high overall sequence similarity.

186

Publications

13.7K

Citations

1K

Authors

395

Institutions

Publications per year

2017–2026

59

Parents

Publications

186

Strains, functions and dynamics in the expanded Human Microbiome Project

Jason Lloyd‐Price, Anup Mahurkar, Jonathan Crabtree et al. · Nature · 2017 · 1.4K citations · Full text

, , +17

Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability

Moran Yassour, Tommi Vatanen, Heli Siljander et al. · Science Translational Medicine · 2016 · 1.1K citations · Full text

, , +17

Microbial strain-level population structure and genetic diversity from metagenomes

Duy Tin Truong, Adrian Tett, Edoardo Pasolli et al. · Genome Research · 2017 · 951 citations · Full text

, , +15

An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography

Stephen Nayfach, Beltran Rodriguez-Mueller, Nandita R. Garud et al. · Genome Research · 2016 · 531 citations · Full text

, , +14

Strain-level microbial epidemiology and population genomics from shotgun metagenomics

Matthias Scholz, Doyle V. Ward, Edoardo Pasolli et al. · Nature Methods · 2016 · 416 citations

, , +16

1–5 of 186

Authors

1K

  1. CH
    Curtis Huttenhower

    Harvard University, United States

    4 publications · 3.5K citations

    4

    h-index

  2. NS
    Nicola Segata

    University of Trento, Italy

    4 publications · 1.5K citations

    4

    h-index

  3. MZ
    M.H. Zwietering

    Wageningen University & Research, Netherlands

    3 publications · 71 citations

    3

    h-index

  4. DA
    David A. Relman

    Stanford University, United States

    3 publications · 370 citations

    3

    h-index

  5. BC
    Brian C. Thomas

    University of California, Berkeley, United States

    3 publications · 370 citations

    3

    h-index

1–5 of 1K

Institutions

395

  1. Harvard University

    Cambridge, United States

    11 h-index

    32 publications

    13.2K citations

  2. Stanford University

    Stanford, United States

    5 h-index

    35 publications

    4.1K citations

  3. Broad Institute

    Cambridge, United States

    4 h-index

    16 publications

    15.2K citations

  4. University of Trento

    Trento, Italy

    4 h-index

    32 publications

    8.6K citations

  5. Lawrence Berkeley National Laboratory

    Berkeley, United States

    4 h-index

    18 publications

    1.2K citations

  6. Centre National de la Recherche Scientifique

    Paris, France

    4 h-index

    12 publications

    907 citations

  7. University of California, Berkeley

    Berkeley, United States

    4 h-index

    10 publications

    1.2K citations

  8. University of California San Diego

    San Diego, United States

    4 h-index

    8 publications

    3.4K citations

1–8 of 395

Venues

  1. Journal of Bacteriology

    JB · 12 publications · 1.6K citations

    12

    h-index

  2. PLoS ONE

    13 publications · 607 citations

    12

    h-index

  3. Applied and Environmental Microbiology

    AEM · 10 publications · 663 citations

    10

    h-index

  4. FEMS Microbiology Letters

    9 publications · 252 citations

    9

    h-index

  5. International Journal of Food Microbiology

    7 publications · 260 citations

    7

    h-index

1–5