Concepedia

Graph-based Genome Representation

Graph-Based Genome Representation is a computational data structure that organizes genomic sequences as nodes and their relationships as edges within a graph, enabling the compact and comprehensive modeling of genetic variation across a population by integrating multiple genomes into a single, unified topology.

71

Publications

19.9K

Citations

438

Authors

206

Institutions

Publications per year

2017–2026

43

Variants

Pangenome Graph

Parents

Publications

71

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

Daehwan Kim, Joseph M. Paggi, Chanhee Park et al. · Nature Biotechnology · 2019 · 15.7K citations · Full text

, , +12

The design and construction of reference pangenome graphs with minigraph

Heng Li, Xiaowen Feng, Chong Chu · Genome biology · 2020 · 500 citations · Full text

, , +17

Indexing Graphs for Path Queries with Applications in Genome Research

Jouni Sirén, Niko Välimäki, Veli Mäkinen · IEEE/ACM Transactions on Computational Biology and Bioinformatics · 2014 · 332 citations

, , +17

Super-pangenome analyses highlight genomic diversity and structural variation across wild and cultivated tomato species

Ning Li, Qiang He, Juan Wang et al. · Nature Genetics · 2023 · 301 citations · Full text

, , +17

Fast and accurate genomic analyses using genome graphs

Goran Rakočević, Vladimir Semenyuk, Wan‐Ping Lee et al. · Nature Genetics · 2019 · 247 citations

, , +17

1–5 of 71

Authors

438

  1. BP
    Benedict Paten

    University of California, Santa Cruz, United States

    11 publications · 632 citations

    10

    h-index

  2. AM
    Adam M. Novak

    University of California, Santa Cruz, United States

    9 publications · 508 citations

    9

    h-index

  3. EG
    Erik Garrison

    University of California, Santa Cruz, United States

    5 publications · 339 citations

    5

    h-index

  4. JM
    Jordan M. Eizenga

    University of California, Santa Cruz, United States

    4 publications · 180 citations

    4

    h-index

  5. DH
    David Haussler

    University of California, Santa Cruz, United States

    4 publications · 205 citations

    4

    h-index

1–5 of 438

Institutions

206

  1. University of California, Santa Cruz

    Santa Cruz, United States

    9 h-index

    38 publications

    2K citations

  2. European Bioinformatics Institute

    Cambridge, United Kingdom

    5 h-index

    14 publications

    658 citations

  3. Wellcome Sanger Institute

    Cambridge, United Kingdom

    4 h-index

    4 publications

    295 citations

  4. Chinese Academy of Sciences

    Beijing, China

    4 h-index

    5 publications

    348 citations

  5. University of Oslo

    Oslo, Norway

    4 h-index

    16 publications

    499 citations

  6. Heinrich Heine University Düsseldorf

    Düsseldorf, Germany

    3 h-index

    3 publications

    85 citations

  7. Ministry of Agriculture and Rural Affairs

    Beijing, China

    3 h-index

    24 publications

    3.5K citations

  8. Stony Brook University

    Stony Brook, United States

    3 h-index

    9 publications

    603 citations

1–8 of 206

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 8 publications · 358 citations

    8

    h-index

  2. Genome biology

    7 publications · 751 citations

    7

    h-index

  3. Journal of Computational Biology

    6 publications · 348 citations

    6

    h-index

  4. Bioinformatics

    4 publications · 323 citations

    5

    h-index

  5. Nature Genetics

    4 publications · 857 citations

    4

    h-index

1–5