Niko Välimäki

CTCF/cohesin-binding sites are frequently mutated in cancer

Riku Katainen, Kashyap Dave, Esa Pitkänen et al. · Nature Genetics · 2015 · 456 citations · Full text

Tumor Biology, Medicine, Cancer Genomics +5

Indexing Graphs for Path Queries with Applications in Genome Research

Jouni Sirén, Niko Välimäki, Veli Mäkinen · IEEE/ACM Transactions on Computational Biology and Bioinformatics · 2014 · 319 citations

Burrows-wheeler Transform, Genetics, Generic Approach +23

The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera

Virpi Ahola, Rainer Lehtonen, Panu Somervuo et al. · Nature Communications · 2014 · 238 citations · Full text

Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes

John A. Lees, Minna Vehkala, Niko Välimäki et al. · Nature Communications · 2016 · 220 citations · Full text

Storage and Retrieval of Highly Repetitive Sequence Collections

Veli Mäkinen, Gonzalo Navarro, Jouni Sirén et al. · Journal of Computational Biology · 2010 · 213 citations · Full text

Repetitive Sequence Collection, Engineering, Genetics +21