John A. Lees

Producing polished prokaryotic pangenomes with the Panaroo pipeline

Gerry Tonkin‐Hill, Neil MacAlasdair, Christopher Ruis et al. · Genome biology · 2020 · 1.2K citations · Full text

Potential impact of the COVID-19 pandemic on HIV, tuberculosis, and malaria in low-income and middle-income countries: a modelling study

Alexandra B. Hogan, Britta L. Jewell, Ellie Sherrard-Smith et al. · The Lancet Global Health · 2020 · 923 citations · Full text

Reduction in mobility and COVID-19 transmission

Pierre Nouvellet, Sangeeta Bhatia, Anne Cori et al. · Nature Communications · 2021 · 628 citations · Full text

Fast and flexible bacterial genomic epidemiology with PopPUNK

John A. Lees, Simon R. Harris, Gerry Tonkin‐Hill et al. · Genome Research · 2019 · 471 citations · Full text

pyseer: a comprehensive tool for microbial pangenome-wide association studies

John A. Lees, Marco Galardini, Stephen D. Bentley et al. · Bioinformatics · 2018 · 356 citations · Full text