Simon R. Harris

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Nicholas J. Croucher, Andrew J. Page, Thomas R. Connor et al. · Nucleic Acids Research · 2014 · 2.9K citations · Full text

Life Sciences, Evolutionary Biology, Microbiology +17

A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers

Michael A. Quail, Miriam Smith, Paul Coupland et al. · BMC Genomics · 2012 · 2.1K citations · Full text

Life Sciences, Genetics, Microbiology +9

SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments

Andrew J. Page, Ben Taylor, Aidan Delaney et al. · Microbial Genomics · 2016 · 1.3K citations · Full text

Life Sciences, Bioinformatics, Genetics +15

Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

Tim Carver, Simon R. Harris, Matthew Berriman et al. · Bioinformatics · 2011 · 1.3K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +17

Circlator: automated circularization of genome assemblies using long sequencing reads

Martin Hunt, Nishadi De Silva, Thomas D. Otto et al. · Genome biology · 2015 · 1.2K citations · Full text

Life Sciences, Bioinformatics, Microbiology +17