Concepedia

Computational Efficiency In Alignment

Computational Efficiency in Alignment is a performance metric that quantifies the optimization of time and resource utilization in the process of mapping sequencing reads to a reference genome, distinguishing it from other alignment evaluation criteria by focusing specifically on the scalability and speed of the alignment algorithm.

134

Publications

51.6K

Citations

459

Authors

198

Institutions

Publications per year

2017–2026

50

Parents

Publications

134

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead, Cole Trapnell, Mihai Pop et al. · Genome biology · 2009 · 23K citations · Full text

, , +15

<tt>BLAT</tt>—The <tt>BLAST</tt>-Like Alignment Tool

W. James Kent · Genome Research · 2002 · 8.4K citations · Full text

, , +16

A Greedy Algorithm for Aligning DNA Sequences

Zheng Zhang, Scott Schwartz, Lukas Wagner et al. · Journal of Computational Biology · 2000 · 5.6K citations

, , +14

Fast and accurate de novo genome assembly from long uncorrected reads

Robert Vaser, Ivan Sović, Niranjan Nagarajan et al. · Genome Research · 2017 · 3.4K citations · Full text

, , +15

LAGAN and Multi-LAGAN: Efficient Tools for Large-Scale Multiple Alignment of Genomic DNA

Michael Brudno, Gregory M. Cooper, Michael F. Kim et al. · Genome Research · 2003 · 1.2K citations · Full text

, , +13

1–5 of 134

Authors

459

  1. TL
    Tak‐Wah Lam

    University of Hong Kong, Hong Kong SAR China

    7 publications · 916 citations

    7

    h-index

  2. RL
    Ruibang Luo

    University of Hong Kong, Hong Kong SAR China

    4 publications · 733 citations

    4

    h-index

  3. EW
    Edward Wu

    University of Hong Kong, Hong Kong SAR China

    4 publications · 829 citations

    4

    h-index

  4. SY
    Siu‐Ming Yiu

    University of Hong Kong, Hong Kong SAR China

    3 publications · 713 citations

    3

    h-index

  5. SL
    Steven L. Salzberg

    Johns Hopkins University, United States

    3 publications · 24.4K citations

    3

    h-index

1–5 of 459

Institutions

198

  1. University of Hong Kong

    Pok Fu Lam, Hong Kong

    7 h-index

    51 publications

    8.6K citations

  2. Stanford University

    Stanford, United States

    6 h-index

    26 publications

    11K citations

  3. University of Maryland, College Park

    College Park, United States

    5 h-index

    12 publications

    93.2K citations

  4. University of Michigan

    Ann Arbor, United States

    4 h-index

    22 publications

    1.4K citations

  5. Pennsylvania State University

    State College, United States

    3 h-index

    8 publications

    17.1K citations

  6. Wellcome Sanger Institute

    Cambridge, United Kingdom

    3 h-index

    3 publications

    141 citations

  7. Peking University

    Beijing, China

    3 h-index

    14 publications

    3.5K citations

  8. Center for Life Sciences

    Beijing, China

    3 h-index

    14 publications

    3.5K citations

1–8 of 198

Venues

  1. Bioinformatics

    33 publications · 3.1K citations

    24

    h-index

  2. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 8 publications · 153 citations

    8

    h-index

  3. BMC Bioinformatics

    8 publications · 344 citations

    8

    h-index

  4. Nucleic Acids Research

    7 publications · 2.1K citations

    7

    h-index

  5. PLoS ONE

    5 publications · 588 citations

    5

    h-index

1–5