David R. Kelley

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Cole Trapnell, Adam Roberts, Loyal A. Goff et al. · Nature Protocols · 2012 · 12.9K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +12

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Federico Abascal, Reyes Acosta, Nicholas J. Addleman et al. · Nature · 2020 · 2.6K citations · Full text

Life Sciences, Genetics, Molecular Biology +15

Effective gene expression prediction from sequence by integrating long-range interactions

Žiga Avsec, Vikram Agarwal, Daniel Visentin et al. · Nature Methods · 2021 · 1.3K citations · Full text

Life Sciences, Bioinformatics, Genetics +15

A whole-genome assembly of the domestic cow, Bos taurus

Aleksey V. Zimin, Arthur L. Delcher, Liliana Florea et al. · Genome biology · 2009 · 1.2K citations · Full text

Life Sciences, Bioinformatics, Genetics +14

Basset: learning the regulatory code of the accessible genome with deep convolutional neural networks

David R. Kelley, Jasper Snoek, John L. Rinn · Genome Research · 2016 · 1.2K citations · Full text

Life Sciences, Bioinformatics, Genetics +14