Vikram Agarwal

Predicting effective microRNA target sites in mammalian mRNAs

Vikram Agarwal, George W. Bell, Jin‐Wu Nam et al. · eLife · 2015 · 7.5K citations · Full text

Bioinformatics, Engineering, Mammalian Mrnas +14

Effective gene expression prediction from sequence by integrating long-range interactions

Žiga Avsec, Vikram Agarwal, Daniel Visentin et al. · Nature Methods · 2021 · 1.1K citations · Full text

A systematic evaluation of the design and context dependencies of massively parallel reporter assays

Jason C. Klein, Vikram Agarwal, Fumitaka Inoue et al. · Nature Methods · 2020 · 217 citations · Full text

Engineering, Reporter Gene Assay, Context Dependencies +14

lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements

M. Grace Gordon, Fumitaka Inoue, Beth Martin et al. · Nature Protocols · 2020 · 144 citations · Full text

Functional Genomics, Engineering, Protein Expression +12

Predicting RNA-seq coverage from DNA sequence as a unifying model of gene regulation

Johannes Linder, Divyanshi Srivastava, Han Yuan et al. · Nature Genetics · 2025 · 130 citations · Full text

Bioinformatics, Rna-seq Coverage, Systems Biology +14