Han Yuan

scBasset: sequence-based modeling of single-cell ATAC-seq using convolutional neural networks

Han Yuan, David R. Kelley · Nature Methods · 2022 · 142 citations

Bioinformatics, Engineering, Machine Learning +12

Stage-Specific Human Induced Pluripotent Stem Cells Map the Progression of Myeloid Transformation to Transplantable Leukemia

Andriana G. Kotini, Chan-Jung Chang, Arthur Chow et al. · Cell stem cell · 2017 · 141 citations · Full text

Induced Pluripotent Stem Cell, Developmental Biology, Marrow Transplantation +9

Predicting RNA-seq coverage from DNA sequence as a unifying model of gene regulation

Johannes Linder, Divyanshi Srivastava, Han Yuan et al. · Nature Genetics · 2025 · 130 citations · Full text

Bioinformatics, Rna-seq Coverage, Systems Biology +14

<i>Drosophila</i>Muller F Elements Maintain a Distinct Set of Genomic Properties Over 40 Million Years of Evolution

Wilson Leung, C. Shaffer, Laura K Reed et al. · G3 Genes Genomes Genetics · 2015 · 100 citations · Full text

Individual cell types in C. elegans age differently and activate distinct cell-protective responses

Antoine E. Roux, Han Yuan, Katie Podshivalova et al. · Cell Reports · 2023 · 88 citations · Full text

Aging, C. Elegans Age, Individual Cell Types +22