Cell · 2025 · 34 citations · 108 references
Life SciencesBiologyMolecular BiologyGene ExpressionProtein TranslationRna ProcessingMrna StabilityRibosomal Rna ProcessingRibosome BiogenesisRna DecayTranslation In EukaryotesTranslation RegulationMrna Degradation DynamicsMrna Degradation PathwaysRibosomal Conformational ChangesRibosome-associated Rna DecayTranslation-dependent Mrna Decay
108
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text
clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
Guangchuang Yu, Li-Gen Wang, Yanyan Han et al. · OMICS A Journal of Integrative Biology · 2012 · 38.3K citations
Cutadapt removes adapter sequences from high-throughput sequencing reads
Marcel Martin · EMBnet journal · 2011 · 35.8K citations · Full text
Salmon provides fast and bias-aware quantification of transcript expression
Rob Patro, Geet Duggal, Michael I. Love et al. · Nature Methods · 2017 · 13.7K citations · Full text