Gene Ontology: tool for the unification of biology

Michael Ashburner, Catherine A. Ball, Judith A. Blake, +17

Nature Genetics

Functional GenomicsEngineeringBioinformatics DatabaseBiological DatabaseMedicine +9

<tt>edgeR</tt> : a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth

Bioinformatics

Comprehensive Integration of Single-Cell Data

Tim Stuart, Andrew Butler, Paul Hoffman, +7

Cell

EngineeringBiomedical Data IntegrationData ScienceSingle Cell SequencingMedicine +9

Twelve years of SAMtools and BCFtools

Petr Danecek, James Bonfield, Jennifer Liddle, +8

GigaScience

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

Helga Thorvaldsdóttir, James Robinson, Jill P. Mesirov

Briefings in Bioinformatics

The Cancer Genome Atlas Pan-Cancer analysis project

John N. Weinstein, Gordon B. Mills, Kenna Shaw, +5

Nature Genetics

deepTools2: a next generation web server for deep-sequencing data analysis

Fidel Ramírez, Devon Ryan, Björn Grüning, +6

Nucleic Acids Research

NF-κB signaling in inflammation

Ting Liu, Lingyun Zhang, Donghyun Joo, +1

Signal Transduction and Targeted Therapy

KEGG: integrating viruses and cellular organisms

Minoru Kanehisa, Miho Furumichi, Yoko Sato, +2

Nucleic Acids Research

Viral ReplicationEngineeringSynthetic VirologyGeneticsMolecular Biology +18

Full-length RNA-seq from single cells using Smart-seq2

Simone Picelli, Omid R. Faridani, Åsa K. Björklund, +3

Nature Protocols

Functional GenomicsSingle Cell SequencingMedicineRna SequencingSingle-cell Genomics +5