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Pan-cancer mapping of single CD8+ T cell profiles reveals a TCF1:CXCR6 axis regulating CD28 co-stimulation and anti-tumor immunity

Katherine Tooley, Livnat Jerby, Giulia Escobar, S. Harsha Krovi, Davide Mangani, Gitanjali Dandekar, Hanning Cheng, Asaf Madi, Ella Goldschmidt, Conner Lambden,

Cell Reports Medicine · 2024 · 20 citations · 80 references

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Abstract

cell responses and is essential for effective anti-tumor immunity.

References

80

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love, Wolfgang Huber, Simon Anders · Genome biology · 2014 · 100.5K citations · Full text

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<b>lmerTest</b> Package: Tests in Linear Mixed Effects Models

Alexandra Kuznetsova, Per B. Brockhoff, Rune Haubo Bojesen Christensen · Journal of Statistical Software · 2017 · 23.4K citations · Full text

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RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Bo Li, Colin N. Dewey · BMC Bioinformatics · 2011 · 23.4K citations · Full text

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Fast unfolding of communities in large networks

Vincent D. Blondel, Jean‐Loup Guillaume, Renaud Lambiotte et al. · Journal of Statistical Mechanics Theory and Experiment · 2008 · 21.2K citations · Full text

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Metascape provides a biologist-oriented resource for the analysis of systems-level datasets

Yingyao Zhou, Bin Zhou, Lars Pache et al. · Nature Communications · 2019 · 15.6K citations · Full text

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