Journal of Medicinal Chemistry · 2024 · 10 citations · 26 references
MedicineMedicinal ChemistryPharmacologyCancer PharmacologyMolecular PharmacologyTumor MicroenvironmentBioactive Small MoleculesLigand BindingPharmacodynamics Of Anticancer AgentsTumor Microenvironment ModulationAdenosine Receptor SignalingBinding Free EnergyImmunosuppressive FunctionImmunosuppressive MicroenvironmentIndole ChemistryIndole DerivativesMolecular Simulation AnalysisTumor Microenvironment Effects
Aberrantly elevated adenosine in the tumor microenvironment exerts its immunosuppressive functions through adenosine receptors A 2A R and A 2B R. Antagonism of A 2A R and A 2B R has the potential to suppress tumor growth. Herein, we report a systemic assessment of the effects of an indole modification at position 4, 5, 6, or 7 on both A 2A R/A 2B R activity and selectivity of novel 2-aminopyrimidine compounds. Substituting indole at the 4-/5-position produced potent A 2A R/A 2B R dual antagonism, whereas the 6-position of indole substitution gave highly selective A 2B R antagonism. Molecular dynamics simulation showed that the 5-cyano compound 7ai had a lower binding free energy than the 6-cyano compound 7aj due to water-bridged hydrogen bond interactions with E169 or F168 in A 2A R. Of note, dual A 2A R/A 2B R antagonism by compound 7ai can profoundly promote the activation and cytotoxic function of T cells. This work provided a strategy for obtaining novel dual A 2A R/A 2B R or A 2B R antagonists by fine-tuning structural modification.
26
Highly accurate protein structure prediction with AlphaFold
John Jumper, Alexander Pritzel, Tim Green et al. · Nature · 2021 · 45.2K citations · Full text
De novo design of protein structure and function with RFdiffusion
Joseph L. Watson, David Juergens, Nathaniel R. Bennett et al. · Nature · 2023 · 2K citations · Full text
Engineering, Bioinformatics, Biology +15
Design of a Novel Globular Protein Fold with Atomic-Level Accuracy
Brian Kuhlman, Gautam Dantas, Gregory C. Ireton et al. · Science · 2003 · 1.7K citations
The cellular thermal shift assay for evaluating drug target interactions in cells
Rozbeh Jafari, Helena Almqvist, Hanna Axelsson et al. · Nature Protocols · 2014 · 1.5K citations
Medicine, Cell Biology, Pharmacology +13