Nucleic Acids Research · 2023 · 427 citations · 17 references
Life SciencesBioinformaticsBiologyGenomicsKnowledge MappingPathway AnalysisKnowledge RepositoriesPathway AnnotationPathway CurationPathway DatabasesBiological Pathway CurationCurated Pathway ResourcesMetabolic Pathway CurationPathway Database ConstructionPathway Database CurationPathway Knowledge BasesPathway Knowledge RepresentationPathway Knowledgebases
WikiPathways (wikipathways.org) is an open-source biological pathway database. Collaboration and open science are pivotal to the success of WikiPathways. Here we highlight the continuing efforts supporting WikiPathways, content growth and collaboration among pathway researchers. As an evolving database, there is a growing need for WikiPathways to address and overcome technical challenges. In this direction, WikiPathways has undergone major restructuring, enabling a renewed approach for sharing and curating pathway knowledge, thus providing stability for the future of community pathway curation. The website has been redesigned to improve and enhance user experience. This next generation of WikiPathways continues to support existing features while improving maintainability of the database and facilitating community input by providing new functionality and leveraging automation.
17
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
Paul Shannon, Andrew Markiel, Owen Ozier et al. · Genome Research · 2003 · 54.3K citations · Full text
clusterProfiler 4.0: A universal enrichment tool for interpreting omics data
Tianzhi Wu, Erqiang Hu, Shuangbin Xu et al. · The Innovation · 2021 · 12.7K citations · Full text