clusterProfiler 4.0: A universal enrichment tool for interpreting omics data

Tianzhi Wu, Erqiang Hu, Shuangbin Xu, +11

The Innovation

Exploring Epigenomic Datasets by ChIPseeker

Qianwen Wang, Ming Li, Tianzhi Wu, +8

Current Protocols

EngineeringGeneticsData PreparationEpigenomic DatasetsGenomics +25

ggtreeExtra: Compact Visualization of Richly Annotated Phylogenetic Data

Shuangbin Xu, Zehan Dai, Pingfan Guo, +12

Molecular Biology and Evolution

MicrobiotaProcess: A comprehensive R package for deep mining microbiome

Shuangbin Xu, Li Zhan, Wenli Tang, +8

The Innovation

ggmsa: a visual exploration tool for multiple sequence alignment and associated data

Lang Zhou, Tingze Feng, Shuangbin Xu, +10

Briefings in Bioinformatics

GeneticsVisual Exploration ToolGenomicsSequence AlignmentR Package +18

Open-source analytics tools for studying the COVID-19 coronavirus outbreak

Tianzhi Wu, Erqiang Hu, Xijin Ge, +1

World Health OrganizationOpen-source Analytics ToolsVirus EpidemiologyCovid-19 OutbreakDisease Outbreak +17

MicrobiotaProcess: A comprehensive R package for managing and analyzing microbiome and other ecological data within the tidy framework

Shuangbin Xu, Li Zhan, Wenli Tang, +9

DysbiosisHuman Microbial FloraData StructureMicrobiome BiologyMicrobiota Function +18

An enhancer variant at 16q22.1 predisposes to hepatocellular carcinoma via regulating PRMT7 expression

Ting Shen, Ting Ni, Jiaxuan Chen, +20

Nature Communications

nCov2019: an R package for studying the COVID-19 coronavirus pandemic

Tianzhi Wu, Erqiang Hu, Xijin Ge, +1

PeerJ

Stemness Analysis Uncovers That The Peroxisome Proliferator-Activated Receptor Signaling Pathway Can Mediate Fatty Acid Homeostasis In Sorafenib-Resistant Hepatocellular Carcinoma Cells

Tingze Feng, Tianzhi Wu, Yanxia Zhang, +13

Frontiers in Oncology