Concepedia

CCPlotR: an R package for the visualization of cell–cell interactions

Sarah Ennis, Pilib Ó Broin, Éva Szegezdi

Bioinformatics Advances · 2023 · 14 citations · 7 references

DOIFull text

Open access

Abstract

CCPlotR is available to download and install from GitHub (https://github.com/Sarah145/CCPlotR) and comes with a toy dataset to demonstrate the different functions. Support for users will be provided via the GitHub issues tracker (https://github.com/Sarah145/CCPlotR/issues).

References

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Suoqin Jin, Christian F. Guerrero‐Juarez, Lihua Zhang et al. · Nature Communications · 2021 · 7.5K citations · Full text

CellPhoneDB: inferring cell–cell communication from combined expression of multi-subunit ligand–receptor complexes

Mirjana Efremova, Miquel Vento-Tormo, Sarah A. Teichmann et al. · Nature Protocols · 2020 · 3.4K citations

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Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data

Daniel Dimitrov, Dénes Türei, Martín Garrido‐Rodríguez et al. · Nature Communications · 2022 · 509 citations · Full text

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Axel A. Almet, Zixuan Cang, Suoqin Jin et al. · Current Opinion in Systems Biology · 2021 · 201 citations · Full text