Nature Protocols · 2020 · 3.6K citations · 30 references
Life SciencesBioinformaticsMolecular BiologyCell SignalingCell-cell CommunicationMolecular Cell BiologyCell-cell Communication AnalysisIntercellular CommunicationLigand BindingLigand-receptor InteractionsProtein-ligand InteractionsReceptor-ligand InteractionsCell - Cell Communication ModelingCell-cell Communication CircuitsCell-cell Communication InferenceCell-cell Communication Pathway AnalysisLigand-receptor Interaction AnalysisProtein-ligand ComplexesSpatial Cell-cell Communication
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Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
Paul Shannon, Andrew Markiel, Owen Ozier et al. · Genome Research · 2003 · 54.3K citations · Full text
Spatial reconstruction of single-cell gene expression data
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Pfam: the protein families database
ROBERT FINN, Alex Bateman, Jody Clements et al. · Nucleic Acids Research · 2013 · 6.5K citations · Full text
Visualization and analysis of gene expression in tissue sections by spatial transcriptomics
Patrik L. Ståhl, Fredrik Salmén, Sanja Vicković et al. · Science · 2016 · 3.9K citations