Nature Cell Biology · 2023 · 41 citations · 90 references
Life SciencesDevelopmental BiologyMolecular BiologyEpigeneticsGametogenesisGene ExpressionDevelopmental EpigeneticsEpigenetic Regulation In DevelopmentGerm Cell DevelopmentGerm Cell DifferentiationGerm Cell SpecificationPrimordial Germ Cell DevelopmentGametogenesis RegulationGerm Cell Lineage CommitmentGerm Cell Lineage SpecificationGermline CompetenceGermline EpigeneticsGermline SpecificationHuman Embryonic Stem CellsPrimordial Germ Cell Epigenetic Resetting
Germline commitment following primordial germ cell (PGC) specification during early human development establishes an epigenetic programme and competence for gametogenesis. Here we follow the progression of nascent PGC-like cells derived from human embryonic stem cells in vitro. We show that switching from BMP signalling for PGC specification to Activin A and retinoic acid resulted in DMRT1 and CDH5 expression, the indicators of migratory PGCs in vivo. Moreover, the induction of DMRT1 and SOX17 in PGC-like cells promoted epigenetic resetting with striking global enrichment of 5-hydroxymethylcytosine and locus-specific loss of 5-methylcytosine at DMRT1 binding sites and the expression of DAZL representing DNA methylation-sensitive genes, a hallmark of the germline commitment programme. We provide insight into the unique role of DMRT1 in germline development for advances in human germ cell biology and in vitro gametogenesis.
90
Fiji: an open-source platform for biological-image analysis
Johannes Schindelin, Ignacio Arganda‐Carreras, Erwin Frise et al. · Nature Methods · 2012 · 70.9K citations
Fast gapped-read alignment with Bowtie 2
Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text