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Single-cell transcriptomic analysis of endometriosis

Marcos A. Fonseca, Marcela Haro, Kelly N. Wright, Xianzhi Lin, Forough Abbasi, Jennifer K. Sun, Lourdes Hernández, Natasha L. Orr, Jooyoon Hong, Yunhee Choi-Kuaea,

Nature Genetics · 2023 · 183 citations · 39 references

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39

Fast, sensitive and accurate integration of single-cell data with Harmony

Ilya Korsunsky, Nghia Millard, Jean Fan et al. · Nature Methods · 2019 · 10.5K citations · Full text

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Dimensionality reduction for visualizing single-cell data using UMAP

Étienne Becht, Leland McInnes, John Healy et al. · Nature Biotechnology · 2018 · 5.8K citations

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DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors

Christopher S. McGinnis, Lyndsay M. Murrow, Zev J. Gartner · Cell Systems · 2019 · 4.6K citations · Full text

, , +17

MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data

Greg Finak, Andrew McDavid, Masanao Yajima et al. · Genome biology · 2015 · 3.6K citations · Full text

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Scrublet: Computational Identification of Cell Doublets in Single-Cell Transcriptomic Data

Samuel L. Wolock, Romain Lopez, Allon M. Klein · Cell Systems · 2019 · 2.9K citations · Full text

, , +16