The applications of network analysis in fruit ripening

WGCNA: an R package for weighted correlation network analysis

Peter Langfelder, Steve Horvath · BMC Bioinformatics · 2008 · 27.8K citations · Full text

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

Damian Szklarczyk, Annika L. Gable, David Lyon et al. · Nucleic Acids Research · 2018 · 18.4K citations · Full text

Genetics, Molecular Biology, Genomics +23

ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context

Adam A. Margolin, Ilya Nemenman, Katia Basso et al. · Columbia Academic Commons (Columbia University) · 2006 · 2.4K citations · Full text

Engineering, Genetics, Gene Regulatory Network +17

The <scp>BioGRID</scp> database: A comprehensive biomedical resource of curated protein, genetic, and chemical interactions

Rose Oughtred, Jennifer Rust, Christie Chang et al. · Protein Science · 2020 · 1.8K citations · Full text

General Curation, Molecular Biology, Comprehensive Biomedical Resource +21

The arabidopsis information resource: Making and mining the “gold standard” annotated reference plant genome

Tanya Berardini, Leonore Reiser, Donghui Li et al. · genesis · 2015 · 1.2K citations · Full text

Plant Genetics, Engineering, Botany +19