Postharvest Biology and Technology · 2022 · 18 citations · 29 references
AgricultureHorticultural SciencesMicrobiologyMicrobial EcologyMicrobiome ResearchPlant-microbe InteractionsFruit DiseasesFruit MicrobiologyFruit PathologyPostharvest MicrobiologyPostharvest PathogensVegetable MicrobiologyFruit Microbial EcologyFruit Microbiome ProfilingFruit Surface MicrobiotaMicrobial Ecophysiology On Fruit SurfacesPostharvest Disease DevelopmentPostharvest Fruit MicrobiologyPostharvest Microbiology Of VegetablesPreharvest Fruit Diseases
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fastp: an ultra-fast all-in-one FASTQ preprocessor
Shifu Chen, Yanqing Zhou, Yaru Chen et al. · Bioinformatics · 2018 · 29.7K citations · Full text
UPARSE: highly accurate OTU sequences from microbial amplicon reads
R. C. Edgar · Nature Methods · 2013 · 17.3K citations
FLASH: fast length adjustment of short reads to improve genome assemblies
Tanja Magoč, Steven L. Salzberg · Bioinformatics · 2011 · 15.7K citations · Full text