Microbial Ecology · 2022 · 21 citations · 48 references
Life SciencesMarine SciencesMicrobiologyAquatic MicrobiologyMicrobial EcologyMicrobiome ResearchAquatic Microbial EcologyEnvironmental MicrobiomesGut MicrobiomeGut MicrobiotaMicrobiome DynamicsMicrobiome DysbiosisAquatic MicrobiomesIntestinal Microbiota EffectsIntestinal Microbiota Modulation
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Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
VSEARCH: a versatile open source tool for metagenomics
Torbjørn Rognes, Tomáš Flouri, Ben Nichols et al. · PeerJ · 2016 · 11K citations · Full text
Diet rapidly and reproducibly alters the human gut microbiome
Lawrence A. David, Corinne F. Maurice, Rachel N. Carmody et al. · Nature · 2013 · 10.2K citations · Full text