Concepedia

Further insight into decreases in seed glucosinolate content based on QTL mapping and RNA-seq in Brassica napus L

Hongbo Chao, Huaixin Li, Shuxiang Yan, Weiguo Zhao, Kang Chen, Hao Wang, Nadia Raboanatahiry, Jinyong Huang, Maoteng Li

Theoretical and Applied Genetics · 2022 · 14 citations · 70 references

DOI

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References

70

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love, Wolfgang Huber, Simon Anders · Genome biology · 2014 · 100.5K citations · Full text

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Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text

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STAR: ultrafast universal RNA-seq aligner

Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text

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Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Cole Trapnell, Adam Roberts, Loyal A. Goff et al. · Nature Protocols · 2012 · 12.9K citations · Full text

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Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

Mihaela Pertea, Daehwan Kim, Geo Pertea et al. · Nature Protocols · 2016 · 7.6K citations

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