Applied and Environmental Microbiology · 2022 · 29 citations · 51 references
AgricultureMicrobiologyPoultry ScienceAntimicrobial ResistanceMicrobial GeneticsPoultry MicrobiologyAntimicrobial Resistance In PoultryBacterial Diseases Of PoultryCompetitive Exclusion In PoultryGut Microbiota Of PoultryPoultry BacteriologyVeterinary Antimicrobial ResistanceBroiler Antimicrobial ResistanceExclusion Of Salmonella EntericaFarm Animal MedicineHost-microbe Interaction In ChickensPoultry Gut Microbiome CompositionPoultry Gut Microbiota ModulationResistance Induction By Beneficial MicrobesSalmonella Resistance
Antimicrobial resistance spread is a worldwide health challenge, stemming in large part from the ability of microorganisms to share their genetic material through horizontal gene transfer. To address this issue, many countries and international organizations have adopted a One Health approach to curtail the proliferation of antimicrobial-resistant bacteria. This includes the removal and reduction of antibiotics used in food animal production and the development of alternatives to antibiotics. However, there is still a significant knowledge gap in our understanding of how resistance spreads in the absence of antibiotic selection and the role commensal bacteria play in reducing antibiotic resistance transfer. In this study, we show that commensal bacteria play a key role in reducing the horizontal gene transfer of antibiotic resistance to Salmonella, provide the identity of the bacterial species that potentially perform this function in broiler chickens, and also postulate the mechanism involved.
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Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text
Prokka: rapid prokaryotic genome annotation
Torsten Seemann · Bioinformatics · 2014 · 19.6K citations