Concepedia

Short- and long-read metagenomics of urban and rural South African gut microbiomes reveal a transitional composition and undescribed taxa

Fiona B. Tamburini, Dylan G. Maghini, Ovokeraye H. Oduaran, Ryan Brewster, Michaella Hulley, Venesa Sahibdeen, Shane A. Norris, Stephen Tollman, Kathleen Kahn, Ryan G. Wagner,

Nature Communications · 2022 · 83 citations · 105 references

DOIFull text

Open access

References

105

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love, Wolfgang Huber, Simon Anders · Genome biology · 2014 · 94.7K citations · Full text

Fast and accurate short read alignment with Burrows–Wheeler transform

Heng Li, Richard Durbin · Bioinformatics · 2009 · 60.7K citations · Full text

MUSCLE: multiple sequence alignment with high accuracy and high throughput

R. C. Edgar · Nucleic Acids Research · 2004 · 45.3K citations · Full text

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SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich, Sergey Nurk, Dmitry Antipov et al. · Journal of Computational Biology · 2012 · 25.9K citations · Full text

Welcome to the Tidyverse

Hadley Wickham, Mara Averick, Jennifer Bryan et al. · The Journal of Open Source Software · 2019 · 19.7K citations · Full text

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