Concepedia

Short-read Sequencing

Short-Read Sequencing is a genome sequencing methodology that generates highly accurate sequence reads of relatively short length, typically ranging from 50 to 300 base pairs, by massively parallel sequencing of fragmented DNA templates to enable high-throughput reconstruction of genomic sequences.

1.1K

Publications

300K

Citations

8.1K

Authors

1.9K

Institutions

Publications per year

2017–2026

795

Parents

Publications

1.1K

Fast and accurate short read alignment with Burrows–Wheeler transform

Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text

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featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

Yang Liao, Gordon K. Smyth, Wei Shi · Bioinformatics · 2013 · 29.1K citations · Full text

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead, Cole Trapnell, Mihai Pop et al. · Genome biology · 2009 · 23K citations · Full text

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Model-based Analysis of ChIP-Seq (MACS)

Yong Zhang, Tao Liu, Clifford A. Meyer et al. · Genome biology · 2008 · 19.9K citations · Full text

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Minimap2: pairwise alignment for nucleotide sequences

Heng Li · Bioinformatics · 2018 · 16.8K citations · Full text

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1–5 of 1.1K

Authors

8.1K

  1. EE
    Evan E. Eichler

    University of Washington, United States

    22 publications · 4.3K citations

    21

    h-index

  2. FJ
    Fritz J. Sedlazeck

    Baylor College of Medicine, United States

    21 publications · 3.3K citations

    20

    h-index

  3. MC
    Michael C. Schatz

    Johns Hopkins University, United States

    19 publications · 4.6K citations

    19

    h-index

  4. MC
    Mark Chaisson

    University of Southern California, United States

    14 publications · 2.9K citations

    14

    h-index

  5. AM
    Adam M. Phillippy

    National Human Genome Research Institute, United States

    17 publications · 2.1K citations

    14

    h-index

1–5 of 8.1K

Institutions

1.9K

  1. Wellcome Sanger Institute

    Cambridge, United Kingdom

    33 h-index

    169 publications

    165.7K citations

  2. Howard Hughes Medical Institute

    Chevy Chase, United States

    31 h-index

    99 publications

    31.5K citations

  3. University of Washington

    Seattle, United States

    31 h-index

    185 publications

    28.7K citations

  4. Stanford University

    Stanford, United States

    29 h-index

    152 publications

    33.3K citations

  5. Broad Institute

    Cambridge, United States

    29 h-index

    125 publications

    70.2K citations

  6. Pacific Biosciences (United States)

    Menlo Park, United States

    27 h-index

    85 publications

    11.3K citations

  7. Johns Hopkins University

    Baltimore, United States

    27 h-index

    127 publications

    45K citations

  8. Harvard University

    Cambridge, United States

    26 h-index

    116 publications

    70K citations

1–8 of 1.9K

Venues

  1. Bioinformatics

    89 publications · 155.6K citations

    50

    h-index

  2. Genome Research

    GR · 49 publications · 14.5K citations

    37

    h-index

  3. Nature Communications

    50 publications · 5.9K citations

    37

    h-index

  4. PLoS ONE

    54 publications · 5.7K citations

    34

    h-index

  5. BMC Genomics

    63 publications · 4.2K citations

    34

    h-index

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