Molecular insights into the early stage of glomerular injury in IgA nephropathy using single-cell RNA sequencing

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

Yang Liao, Gordon K. Smyth, Wei Shi · Bioinformatics · 2013 · 29.1K citations · Full text

Life Sciences, Bioinformatics, Biology +14

Integrating single-cell transcriptomic data across different conditions, technologies, and species

Andrew Butler, Paul Hoffman, Peter Smibert et al. · Nature Biotechnology · 2018 · 14.7K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +14

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Daehwan Kim, Geo Pertea, Cole Trapnell et al. · Genome biology · 2013 · 13.7K citations · Full text

Life Sciences, Bioinformatics, Genetics +14

Full-length RNA-seq from single cells using Smart-seq2

Simone Picelli, Omid R. Faridani, Åsa K. Björklund et al. · Nature Protocols · 2014 · 4.5K citations

Life Sciences, Bioinformatics, Molecular Biology +7

RNA velocity of single cells

Gioele La Manno, Ruslan Soldatov, Amit Zeisel et al. · Nature · 2018 · 4.5K citations · Full text

Life Sciences, Cell Biology, Molecular Biology +13