Cell Reports · 2021 · 56 citations · 83 references
MedicineNephrologyOncologyPrecision MedicineTranslational OncologyUrologic OncologyBiomarkers In Urologic OncologyCancer Precision MedicineImmunotherapy For Urologic CancersKidney CancerRenal Cell CarcinomaRenal NeoplasmsMetastatic Kidney CancerMetastatic Renal Cell Carcinoma TherapyPrecision Medicine ApplicationsRenal Cell Carcinoma BiomarkersRenal Malignancy
Renal cell carcinoma (RCC) encompasses a heterogenous group of tumors, but representative preclinical models are lacking. We previously showed that patient-derived tumorgraft (TG) models recapitulate the biology and treatment responsiveness. Through systematic orthotopic implantation of tumor samples from 926 ethnically diverse individuals into non-obese diabetic (NOD)/severe combined immunodeficiency (SCID) mice, we generate a resource comprising 172 independently derived, stably engrafted TG lines from 148 individuals. TG lines are characterized histologically and genomically (whole-exome [n = 97] and RNA [n = 102] sequencing). The platform features a variety of histological and oncogenotypes, including TCGA clades further corroborated through orthogonal metabolomic analyses. We illustrate how it enables a deeper understanding of RCC biology; enables the development of tissue- and imaging-based molecular probes; and supports advances in drug development.
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Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text
Twelve years of SAMtools and BCFtools
Petr Danecek, James Bonfield, Jennifer Liddle et al. · GigaScience · 2021 · 15.9K citations · Full text