scMRA: a robust deep learning method to annotate scRNA-seq data with multiple reference datasets

Comprehensive Integration of Single-Cell Data

Tim Stuart, Andrew Butler, Paul Hoffman et al. · Cell · 2019 · 16K citations · Full text

Engineering, Biomedical Data Integration, Data Science +11

Spatial reconstruction of single-cell gene expression data

Rahul Satija, Jeffrey A. Farrell, David Gennert et al. · Nature Biotechnology · 2015 · 7.3K citations · Full text

Functional Genomics, Engineering, Single Cell Sequencing +10

The single-cell transcriptional landscape of mammalian organogenesis

Junyue Cao, Malte Spielmann, Xiaojie Qiu et al. · Nature · 2019 · 4.4K citations

Cell Lineage, Developmental Biology, Single Cell Sequencing +7

Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris

Nature · 2018 · 3.1K citations

Tabula Muris, Cell Lineage, Developmental Biology +9

Smart-seq2 for sensitive full-length transcriptome profiling in single cells

Simone Picelli, Åsa K. Björklund, Omid R. Faridani et al. · Nature Methods · 2013 · 2.5K citations

Bioinformatics, Functional Genomics, Single Cell Sequencing +8