Concepedia

Cell Annotation

Cell Annotation is the process of assigning biological identity to individual cells in single-cell transcriptomic data by mapping measured gene expression profiles to known cell types or states through reference-based or de novo inference methods.

133

Publications

11.5K

Citations

919

Authors

315

Institutions

Publications per year

2017–2026

119

Parents

Publications

133

CellMarker 2.0: an updated database of manually curated cell markers in human/mouse and web tools based on scRNA-seq data

Congxue Hu, Tengyue Li, Yingqi Xu et al. · Nucleic Acids Research · 2022 · 1.2K citations · Full text

, , +15

CellProfiler™: Free, Versatile Software for Automated Biological Image Analysis

Michael R. Lamprecht, David M. Sabatini, Anne E. Carpenter · BioTechniques · 2007 · 946 citations · Full text

, , +15

Probabilistic harmonization and annotation of single‐cell transcriptomics data with deep generative models

Chenling Xu, Romain Lopez, Edouard Mehlman et al. · Molecular Systems Biology · 2021 · 699 citations · Full text

, , +17

scBERT as a large-scale pretrained deep language model for cell type annotation of single-cell RNA-seq data

Fan Yang, Wenchuan Wang, Fang Wang et al. · Nature Machine Intelligence · 2022 · 588 citations

, , +15

Supervised classification enables rapid annotation of cell atlases

Hannah A. Pliner, Jay Shendure, Cole Trapnell · Nature Methods · 2019 · 556 citations

, , +12

1–5 of 133

Authors

919

  1. AO
    Angela Oliveira Pisco

    Chan Zuckerberg Initiative (United States), United States

    5 publications · 268 citations

    5

    h-index

  2. FJ
    Fabian J. Theis

    Helmholtz Zentrum München, Germany

    5 publications · 171 citations

    5

    h-index

  3. JK
    Jim Karkanias

    Stanford University, United States

    4 publications · 226 citations

    4

    h-index

  4. KJ
    Kang Jin

    Cincinnati Children's Hospital Medical Center, United States

    4 publications · 268 citations

    4

    h-index

  5. AM
    Ahmed Mahfouz

    Leiden University Medical Center, Netherlands

    4 publications · 199 citations

    4

    h-index

1–5 of 919

Institutions

315

  1. Harvard University

    Cambridge, United States

    10 h-index

    42 publications

    3.4K citations

  2. Stanford University

    Stanford, United States

    10 h-index

    220 publications

    19K citations

  3. Peking University

    Beijing, China

    9 h-index

    39 publications

    4.2K citations

  4. Chan Zuckerberg Initiative (United States)

    Redwood City, United States

    9 h-index

    84 publications

    8K citations

  5. Broad Institute

    Cambridge, United States

    7 h-index

    25 publications

    2.8K citations

  6. Howard Hughes Medical Institute

    Chevy Chase, United States

    7 h-index

    26 publications

    2.4K citations

  7. Helmholtz Zentrum München

    Munich, Germany

    6 h-index

    35 publications

    1.2K citations

  8. University of Washington

    Seattle, United States

    6 h-index

    15 publications

    2K citations

1–8 of 315

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 30 publications · 1.2K citations

    19

    h-index

  2. Nature Communications

    11 publications · 1.3K citations

    11

    h-index

  3. Bioinformatics

    9 publications · 649 citations

    9

    h-index

  4. Nucleic Acids Research

    8 publications · 1.7K citations

    8

    h-index

  5. iScience

    5 publications · 447 citations

    5

    h-index

1–5