Hannah A. Pliner

Reversed graph embedding resolves complex single-cell trajectories

Xiaojie Qiu, Qi Mao, Ying Tang et al. · Nature Methods · 2017 · 5K citations · Full text

Graph Theory, Medicine, Biological Network +6

Multiplex single-cell profiling of chromatin accessibility by combinatorial cellular indexing

Darren A. Cusanovich, Riza M. Daza, Andrew C. Adey et al. · Science · 2015 · 1.3K citations · Full text

Joint profiling of chromatin accessibility and gene expression in thousands of single cells

Junyue Cao, Darren A. Cusanovich, Vijay Ramani et al. · Science · 2018 · 1K citations

Bioinformatics, Chromatin, Chromatin Accessibility +14

Cicero Predicts cis-Regulatory DNA Interactions from Single-Cell Chromatin Accessibility Data

Hannah A. Pliner, Jonathan S. Packer, José L. McFaline‐Figueroa et al. · Molecular Cell · 2018 · 873 citations · Full text

Chromatin, Transcriptional Regulation, Functional Genomics +15

A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility

Darren A. Cusanovich, Andrew J. Hill, Delasa Aghamirzaie et al. · Cell · 2018 · 866 citations · Full text

Chromatin, Chromatin Structure, Chromatin Remodeling +10