The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

Cole Trapnell, Davide Cacchiarelli, Jonna Grimsby, +7

Nature Biotechnology

Pattern FormationDevelopmental BiologyCell DivisionCell InteractionSingle-cell Biology +10

Objective Criteria for the Evaluation of Clustering Methods

Journal of the American Statistical Association

Clustering by fast search and find of density peaks

Álex Rodríguez, Alessandro Laio

Science

Cluster ComputingEngineeringCluster AnalysisUnsupervised Machine LearningText Mining +15

Single-cell mRNA quantification and differential analysis with Census

Xiaojie Qiu, Andrew J. Hill, Jonathan S. Packer, +3

Nature Methods

Single-cell Mrna QuantificationSystems BiologyFunctional GenomicsEngineeringSingle Cell Sequencing +9

Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq

Barbara Treutlein, Douglas Brownfield, Angela Ruohao Wu, +6

Nature

Lineage HierarchiesCell LineageDevelopmental BiologySingle Cell SequencingMedicine +7

Diffusion pseudotime robustly reconstructs lineage branching

Laleh Haghverdi, Maren Büttner, F. Alexander Wolf, +2

Nature Methods

BiologyPattern FormationNatural SciencesEvolutionary BiologyComputational Biology +4

The theory of dynamic programming

Richard Bellman

Bulletin of the American Mathematical Society

Mathematical ProgrammingInvited AddressEngineeringOptimization ProblemGame Theory +10

Multiplex single-cell profiling of chromatin accessibility by combinatorial cellular indexing

Darren A. Cusanovich, Riza M. Daza, Andrew C. Adey, +6

Science

Single-cell RNA-seq supports a developmental hierarchy in human oligodendroglioma

Itay Tirosh, Andrew S. Venteicher, Christine Hebert, +35

Nature

Developmental HierarchyDevelopmental BiologyGliomaSingle Cell SequencingMedicine +3

Natural Scales in Geographical Patterns

Telmo Menezes, Camille Roth

arXiv (Cornell University)

EngineeringGeomorphologyClear Phase TransitionsSocial SciencesNatural Scales +15