Concepedia

Reference-based Cell Type Annotation

Reference-Based Cell Type Annotation is a computational method in single-cell genomics that assigns cell types to unlabeled transcriptomic profiles by aligning them to a pre-existing, annotated reference atlas, thereby leveraging known biological identities to inform annotation in new datasets.

54

Publications

3.5K

Citations

425

Authors

186

Institutions

Publications per year

2017–2026

51

Parents

Publications

54

Molecular analysis of endothelial progenitor cell (EPC) subtypes reveals two distinct cell populations with different identities

Reinhold J. Medina, Christina O’Neill, Mark Sweeney et al. · BMC Medical Genomics · 2010 · 324 citations · Full text

, , +17

The Human Cell Atlas bone marrow single-cell interactive web portal

Stuart Hay, Kyle Ferchen, Kashish Chetal et al. · Experimental Hematology · 2018 · 273 citations · Full text

, , +17

Efficient and precise single-cell reference atlas mapping with Symphony

Joyce B. Kang, Aparna Nathan, Kathryn Weinand et al. · Nature Communications · 2021 · 250 citations · Full text

, , +17

Transformer for one stop interpretable cell type annotation

Jiawei Chen, Hao Xu, Wanyu Tao et al. · Nature Communications · 2023 · 195 citations · Full text

, , +17

An improved zebrafish transcriptome annotation for sensitive and comprehensive detection of cell type-specific genes

Nathan D. Lawson, Rui Li, Masahiro Shin et al. · eLife · 2020 · 171 citations · Full text

, , +17

1–5 of 54

Authors

425

  1. NS
    Nathan Salomonis

    Cincinnati Children's Hospital Medical Center, United States

    3 publications · 453 citations

    3

    h-index

  2. MD
    Minghua Deng

    Peking University, China

    3 publications · 138 citations

    3

    h-index

  3. ML
    Mohammad Lotfollahi

    Helmholtz Zentrum München, Germany

    3 publications · 195 citations

    3

    h-index

  4. FJ
    Fabian J. Theis

    Helmholtz Zentrum München, Germany

    3 publications · 180 citations

    3

    h-index

  5. BC
    Brian Cox

    University of Toronto, Canada

    2 publications · 164 citations

    2

    h-index

1–5 of 425

Institutions

186

  1. University of Cambridge

    Cambridge, United Kingdom

    5 h-index

    8 publications

    595 citations

  2. Peking University

    Beijing, China

    4 h-index

    16 publications

    1.6K citations

  3. Stanford University

    Stanford, United States

    4 h-index

    19 publications

    1.5K citations

  4. Gladstone Institutes

    San Francisco, United States

    4 h-index

    4 publications

    176 citations

  5. Wellcome Sanger Institute

    Cambridge, United Kingdom

    4 h-index

    35 publications

    2.7K citations

  6. Harvard University

    Cambridge, United States

    4 h-index

    28 publications

    2.4K citations

  7. Broad Institute

    Cambridge, United States

    4 h-index

    17 publications

    2.4K citations

  8. Cincinnati Children's Hospital Medical Center

    Cincinnati, United States

    4 h-index

    36 publications

    4K citations

1–8 of 186

Venues

  1. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 9 publications · 210 citations

    9

    h-index

  2. Nucleic Acids Research

    7 publications · 290 citations

    7

    h-index

  3. Nature Communications

    5 publications · 740 citations

    5

    h-index

  4. Bioinformatics

    3 publications · 114 citations

    3

    h-index

  5. Nature Genetics

    3 publications · 263 citations

    3

    h-index

1–5